PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.095280.1
Common NameCsa_4G011680, LOC101218499
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 168aa    MW: 18458.4 Da    PI: 7.8811
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.095280.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.57.3e-0655941054
                    HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    + R d++ +++  L++l+ +      +K + a++L +A+eYI+ L
  Cucsa.095280.1 55 KERKDKLGERIMALQQLVSPY-----GKTDTASVLLEAMEYIQFL 94
                    77999999**********999.....9****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.0E-1044103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.6934594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-1247108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-453100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.34E-65599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MIASSLCNAS AKFPAEVMEV ETMMEQKRTL CSVDESALTS LTPKRHKTDF SISSKERKDK  60
LGERIMALQQ LVSPYGKTDT ASVLLEAMEY IQFLHEQVKV LSAPYLQSTP TVLLQEVEPC  120
SHSLRSRGLC LVPISCTAGV ARSNGADIWA PVKTISPKFE KHISPFN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818742e-79LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132612e-79LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004152130.11e-122PREDICTED: transcription factor bHLH113-like
SwissprotQ9LT672e-33BH113_ARATH; Transcription factor bHLH113
TrEMBLA0A0A0KYW41e-122A0A0A0KYW4_CUCSA; Uncharacterized protein
STRINGGLYMA02G15520.12e-76(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108133138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.51e-65bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]